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This function runs a permutation test on Vst calculation

Usage

vstPermutation(
  AD,
  pops,
  nperm = 100,
  histogram = TRUE,
  stat = 2,
  qGraph = TRUE
)

Arguments

AD

data frame of total allele depth values of SNPs

pops

character. A vector of population names for each individual. Must be the same length as the number of samples in AD

nperm

numeric. Number of permutations to perform

histogram

logical. plots the distribution histogram of permuted vst values vs. observed values

stat

numeric. The stat to be plotted in histogram. 1 for Mean Absolute Distance or 2 (default) for Root Mean Square Distance

qGraph

logical. Plot the network plot based on observed Vst values (see vst() help page for more details)

Value

Returns a list with observed vst values, an array of permuted vst values and the p-values for the permutation test

Author

Jorge Cortés-Miranda (email:jorge.cortes.m@ug.uchile.cl), Piyal Karunarathne

Examples

if (FALSE) data(alleleINF)
data(ADtable)
DD<-dupGet(alleleINF)
#> categorizing deviant SNPs with 
#>  excess of heterozygotes z.all & chi.all

ds<-DD[DD$dup.stat=="deviant",]
ad<-ADtable[match(paste0(ds$CHROM,".",ds$POS),paste0(ADtable$CHROM,".",ADtable$POS)),]
vstPermutation(ad,pops=substr(colnames(ad)[-c(1:4)],1,11)) # \dontrun{}
#> Permuting Vst
#> 
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#> Calculating ovserved Vst
#> 
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#> $observed_vst
#>             KKOGR07_000  KKOGR07_001  KKOGR07_002   KKOGR07_003  KKOGR07_004
#> KKOGR07_000          NA           NA           NA            NA           NA
#> KKOGR07_001 -0.05122414           NA           NA            NA           NA
#> KKOGR07_002 -0.04371113 -0.042496590           NA            NA           NA
#> KKOGR07_003 -0.02603668 -0.026878950 -0.022139367            NA           NA
#> KKOGR07_004 -0.01252776 -0.005286347 -0.009161007  0.0217061531           NA
#> KKOGR07_005 -0.04848016  0.001521456  0.004962315  0.0151247848  0.032953289
#> KKOGR07_006 -0.05562812 -0.014114825 -0.014535465  0.0077975184  0.015824418
#> KKOKT10_000  0.13616157  0.186596780  0.204152082  0.0869423330  0.256857888
#> KKOKT10_001 -0.05780229 -0.039294302 -0.035640345 -0.0310422447 -0.009366708
#> KKOKT10_002 -0.03738761 -0.016342567 -0.023458249 -0.0148268130 -0.001101267
#> KKOKT10_003 -0.02774479 -0.013764561 -0.012173887 -0.0150586122  0.019466392
#> KKOKT10_004 -0.02774910 -0.010272805 -0.016956333 -0.0193283672  0.027305690
#> KKOKT10_005 -0.01881313  0.008650971  0.009339490 -0.0006875292  0.041958367
#> KKOKT10_006  0.01223390  0.016782762  0.005973111  0.0373721639 -0.027712851
#> KKOKT10_007 -0.04286858 -0.003037995 -0.015330106  0.0092210254  0.000359757
#>              KKOGR07_005  KKOGR07_006 KKOKT10_000  KKOKT10_001  KKOKT10_002
#> KKOGR07_000           NA           NA          NA           NA           NA
#> KKOGR07_001           NA           NA          NA           NA           NA
#> KKOGR07_002           NA           NA          NA           NA           NA
#> KKOGR07_003           NA           NA          NA           NA           NA
#> KKOGR07_004           NA           NA          NA           NA           NA
#> KKOGR07_005           NA           NA          NA           NA           NA
#> KKOGR07_006 -0.031420615           NA          NA           NA           NA
#> KKOKT10_000  0.245367293  0.275764500          NA           NA           NA
#> KKOKT10_001 -0.033006393 -0.032583610  0.07668781           NA           NA
#> KKOKT10_002  0.012029077 -0.001113533  0.17827212 -0.053217457           NA
#> KKOKT10_003  0.039989191  0.028427012  0.19380683 -0.051441882 -0.037921936
#> KKOKT10_004  0.033516110  0.018835012  0.14721069 -0.047534596 -0.031878762
#> KKOKT10_005  0.053380978  0.044445648  0.15893253 -0.030200484 -0.005879087
#> KKOKT10_006  0.072861128  0.050073301  0.35024893 -0.006957781  0.003017883
#> KKOKT10_007  0.001646667 -0.029910661  0.30899688 -0.044790561 -0.023194798
#>               KKOKT10_003  KKOKT10_004 KKOKT10_005 KKOKT10_006 KKOKT10_007
#> KKOGR07_000            NA           NA          NA          NA          NA
#> KKOGR07_001            NA           NA          NA          NA          NA
#> KKOGR07_002            NA           NA          NA          NA          NA
#> KKOGR07_003            NA           NA          NA          NA          NA
#> KKOGR07_004            NA           NA          NA          NA          NA
#> KKOGR07_005            NA           NA          NA          NA          NA
#> KKOGR07_006            NA           NA          NA          NA          NA
#> KKOKT10_000            NA           NA          NA          NA          NA
#> KKOKT10_001            NA           NA          NA          NA          NA
#> KKOKT10_002            NA           NA          NA          NA          NA
#> KKOKT10_003            NA           NA          NA          NA          NA
#> KKOKT10_004 -0.0428280300           NA          NA          NA          NA
#> KKOKT10_005 -0.0177511147 -0.018142971          NA          NA          NA
#> KKOKT10_006  0.0196278521  0.035513265  0.06519210          NA          NA
#> KKOKT10_007 -0.0001255767  0.003424613  0.02279381  0.00874942          NA
#> 
#> $permuted_vst
#> , , 1
#> 
#>              KKOGR07_000  KKOGR07_001  KKOGR07_002 KKOGR07_003 KKOGR07_004
#> KKOGR07_000           NA           NA           NA          NA          NA
#> KKOGR07_001  0.022514987           NA           NA          NA          NA
#> KKOGR07_002  0.007537305 -0.032868217           NA          NA          NA
#> KKOGR07_003 -0.030565446  0.022270577  0.003343151          NA          NA
#> KKOGR07_004 -0.020477102  0.028886002  0.016394608 -0.03758981          NA
#> KKOGR07_005 -0.021333542  0.021305922  0.005034589 -0.03200479 -0.03034230
#> KKOGR07_006  0.018898434 -0.071526845 -0.036344372  0.02012804  0.02969846
#> KKOKT10_000  0.021144930 -0.039161833 -0.032014126  0.01310399  0.03178393
#> KKOKT10_001 -0.030360575 -0.026317145 -0.044105251 -0.03260905 -0.02220422
#> KKOKT10_002 -0.027576662 -0.019963427 -0.021785385 -0.02933777 -0.02640046
#> KKOKT10_003  0.023559830 -0.053955021 -0.025232375  0.01749730  0.02055311
#> KKOKT10_004 -0.019776305 -0.019085451 -0.014416282 -0.02380415 -0.02833238
#> KKOKT10_005 -0.067954968  0.001770303 -0.001993468 -0.02605694 -0.01997493
#> KKOKT10_006  0.003150310  0.102839722  0.067376321 -0.02757790 -0.02746781
#> KKOKT10_007 -0.054381826 -0.075963123 -0.059068832 -0.02579348 -0.01134545
#>               KKOGR07_005 KKOGR07_006 KKOKT10_000  KKOKT10_001  KKOKT10_002
#> KKOGR07_000            NA          NA          NA           NA           NA
#> KKOGR07_001            NA          NA          NA           NA           NA
#> KKOGR07_002            NA          NA          NA           NA           NA
#> KKOGR07_003            NA          NA          NA           NA           NA
#> KKOGR07_004            NA          NA          NA           NA           NA
#> KKOGR07_005            NA          NA          NA           NA           NA
#> KKOGR07_006  2.050457e-02          NA          NA           NA           NA
#> KKOKT10_000  2.086588e-02 -0.05255602          NA           NA           NA
#> KKOKT10_001 -3.283067e-02 -0.02927815 -0.03049808           NA           NA
#> KKOKT10_002 -2.939262e-02 -0.01831683 -0.01603751 -0.042250465           NA
#> KKOKT10_003  1.672327e-02 -0.06797349 -0.04189792 -0.023258236 -0.017927083
#> KKOKT10_004 -2.580985e-02 -0.02294119 -0.01006987 -0.035223496 -0.044654015
#> KKOKT10_005 -1.815077e-02 -0.00186446  0.01010225 -0.033399199 -0.025573420
#> KKOKT10_006  2.754771e-05  0.09791422  0.10447424 -0.001412321  0.007177499
#> KKOKT10_007 -2.958812e-02 -0.08431777 -0.06511980 -0.051475761 -0.047874104
#>              KKOKT10_003 KKOKT10_004  KKOKT10_005 KKOKT10_006 KKOKT10_007
#> KKOGR07_000           NA          NA           NA          NA          NA
#> KKOGR07_001           NA          NA           NA          NA          NA
#> KKOGR07_002           NA          NA           NA          NA          NA
#> KKOGR07_003           NA          NA           NA          NA          NA
#> KKOGR07_004           NA          NA           NA          NA          NA
#> KKOGR07_005           NA          NA           NA          NA          NA
#> KKOGR07_006           NA          NA           NA          NA          NA
#> KKOKT10_000           NA          NA           NA          NA          NA
#> KKOKT10_001           NA          NA           NA          NA          NA
#> KKOKT10_002           NA          NA           NA          NA          NA
#> KKOKT10_003           NA          NA           NA          NA          NA
#> KKOKT10_004 -0.015119227          NA           NA          NA          NA
#> KKOKT10_005 -0.006287417 -0.03419434           NA          NA          NA
#> KKOKT10_006  0.084381764  0.02014939 -0.005418354          NA          NA
#> KKOKT10_007 -0.066631982 -0.06849780 -0.050769581  0.02245387          NA
#> 
#> , , 2
#> 
#>              KKOGR07_000  KKOGR07_001  KKOGR07_002  KKOGR07_003  KKOGR07_004
#> KKOGR07_000           NA           NA           NA           NA           NA
#> KKOGR07_001 -0.015646707           NA           NA           NA           NA
#> KKOGR07_002  0.012091441 -0.023756646           NA           NA           NA
#> KKOGR07_003  0.007302716 -0.018443825 -0.037927554           NA           NA
#> KKOGR07_004  0.026399940 -0.013464559 -0.032364267 -0.026505486           NA
#> KKOGR07_005 -0.009328106 -0.029755828 -0.021013444 -0.015813511 -0.008554957
#> KKOGR07_006 -0.033238244 -0.009241657  0.006783779  0.011643214  0.023499095
#> KKOKT10_000  0.001455245 -0.026731749 -0.031060209 -0.023085006 -0.022874302
#> KKOKT10_001  0.079147006  0.043692060 -0.019726367 -0.020404877  0.008881662
#> KKOKT10_002 -0.009779226 -0.037822704 -0.028454457 -0.023456563 -0.023406940
#> KKOKT10_003  0.021659519 -0.029923458 -0.047246301 -0.035688611 -0.047655251
#> KKOKT10_004  0.128883304  0.083763562  0.009742739  0.002874327  0.026058179
#> KKOKT10_005  0.180113168  0.113532126  0.022914007  0.003840748  0.025235289
#> KKOKT10_006 -0.009485687 -0.036026661 -0.027292609 -0.025770458 -0.019242702
#> KKOKT10_007  0.216023838  0.139065021  0.041763481  0.021174849  0.048243695
#>              KKOGR07_005  KKOGR07_006 KKOKT10_000 KKOKT10_001 KKOKT10_002
#> KKOGR07_000           NA           NA          NA          NA          NA
#> KKOGR07_001           NA           NA          NA          NA          NA
#> KKOGR07_002           NA           NA          NA          NA          NA
#> KKOGR07_003           NA           NA          NA          NA          NA
#> KKOGR07_004           NA           NA          NA          NA          NA
#> KKOGR07_005           NA           NA          NA          NA          NA
#> KKOGR07_006  0.002793154           NA          NA          NA          NA
#> KKOKT10_000 -0.016958891  0.016957115          NA          NA          NA
#> KKOKT10_001  0.048446024  0.092284028  0.02854349          NA          NA
#> KKOKT10_002 -0.032004003 -0.008960685 -0.02381252  0.03551022          NA
#> KKOKT10_003 -0.023922783  0.019751777 -0.04199103 -0.02717916 -0.03048608
#> KKOKT10_004  0.089830833  0.143510999  0.06387260 -0.04350496  0.07529573
#> KKOKT10_005  0.100802936  0.244106923  0.09402697 -0.03918424  0.09168294
#> KKOKT10_006 -0.025961786  0.005585218 -0.02324971  0.03544027 -0.03208389
#> KKOKT10_007  0.130469133  0.303505223  0.13780724 -0.02977667  0.10725509
#>              KKOKT10_003 KKOKT10_004 KKOKT10_005 KKOKT10_006 KKOKT10_007
#> KKOGR07_000           NA          NA          NA          NA          NA
#> KKOGR07_001           NA          NA          NA          NA          NA
#> KKOGR07_002           NA          NA          NA          NA          NA
#> KKOGR07_003           NA          NA          NA          NA          NA
#> KKOGR07_004           NA          NA          NA          NA          NA
#> KKOGR07_005           NA          NA          NA          NA          NA
#> KKOGR07_006           NA          NA          NA          NA          NA
#> KKOKT10_000           NA          NA          NA          NA          NA
#> KKOKT10_001           NA          NA          NA          NA          NA
#> KKOKT10_002           NA          NA          NA          NA          NA
#> KKOKT10_003           NA          NA          NA          NA          NA
#> KKOKT10_004 -0.010206757          NA          NA          NA          NA
#> KKOKT10_005 -0.007571065 -0.05336121          NA          NA          NA
#> KKOKT10_006 -0.031966404  0.07701041   0.1038049          NA          NA
#> KKOKT10_007 -0.006763031 -0.03964588  -0.0568747   0.1485374          NA
#> 
#> , , 3
#> 
#>               KKOGR07_000  KKOGR07_001  KKOGR07_002 KKOGR07_003  KKOGR07_004
#> KKOGR07_000            NA           NA           NA          NA           NA
#> KKOGR07_001 -0.0623948431           NA           NA          NA           NA
#> KKOGR07_002 -0.0169578019 -0.010550836           NA          NA           NA
#> KKOGR07_003 -0.0469756664 -0.026153811 -0.026389844          NA           NA
#> KKOGR07_004  0.0008141133  0.030305273 -0.037937663  0.01212328           NA
#> KKOGR07_005 -0.0328398713 -0.031761628 -0.030483178 -0.02477854 -0.008198918
#> KKOGR07_006 -0.0679225447 -0.064522440 -0.003005947 -0.03140785  0.036654471
#> KKOKT10_000  0.0163737966  0.057494716 -0.025356327  0.02358420 -0.016055212
#> KKOKT10_001 -0.0630133023 -0.050600030  0.002379686 -0.01286464  0.047359852
#> KKOKT10_002 -0.0511727753 -0.040983472 -0.015898245 -0.02787715  0.017865515
#> KKOKT10_003 -0.0353834190 -0.021110768 -0.038006443 -0.03743213 -0.005159422
#> KKOKT10_004 -0.0303611046 -0.007949719 -0.033936615 -0.02298541 -0.013247031
#> KKOKT10_005 -0.0792977130 -0.073295890  0.004195858 -0.03339414  0.046524940
#> KKOKT10_006 -0.0300305978 -0.026916585 -0.049954243 -0.03205203 -0.040618357
#> KKOKT10_007 -0.0339212411 -0.029063375 -0.065480688 -0.04840486 -0.054859729
#>             KKOGR07_005 KKOGR07_006   KKOKT10_000  KKOKT10_001  KKOKT10_002
#> KKOGR07_000          NA          NA            NA           NA           NA
#> KKOGR07_001          NA          NA            NA           NA           NA
#> KKOGR07_002          NA          NA            NA           NA           NA
#> KKOGR07_003          NA          NA            NA           NA           NA
#> KKOGR07_004          NA          NA            NA           NA           NA
#> KKOGR07_005          NA          NA            NA           NA           NA
#> KKOGR07_006 -0.03316555          NA            NA           NA           NA
#> KKOKT10_000  0.01124418  0.06761295            NA           NA           NA
#> KKOKT10_001 -0.02631053 -0.06774073  7.809599e-02           NA           NA
#> KKOKT10_002 -0.03329837 -0.05276479  3.849276e-02 -0.037393690           NA
#> KKOKT10_003 -0.03484016 -0.03354545  5.420558e-03 -0.014892845 -0.031791864
#> KKOKT10_004 -0.02274154 -0.01231634 -4.693792e-05  0.002609646 -0.009882837
#> KKOKT10_005 -0.02933459 -0.11603729  7.601291e-02 -0.092262328 -0.051905841
#> KKOKT10_006 -0.04284517 -0.02898135 -2.049725e-02 -0.018291964 -0.031018841
#> KKOKT10_007 -0.04817943 -0.03186367 -6.589833e-02 -0.022237243 -0.038572473
#>             KKOKT10_003 KKOKT10_004 KKOKT10_005 KKOKT10_006 KKOKT10_007
#> KKOGR07_000          NA          NA          NA          NA          NA
#> KKOGR07_001          NA          NA          NA          NA          NA
#> KKOGR07_002          NA          NA          NA          NA          NA
#> KKOGR07_003          NA          NA          NA          NA          NA
#> KKOGR07_004          NA          NA          NA          NA          NA
#> KKOGR07_005          NA          NA          NA          NA          NA
#> KKOGR07_006          NA          NA          NA          NA          NA
#> KKOKT10_000          NA          NA          NA          NA          NA
#> KKOKT10_001          NA          NA          NA          NA          NA
#> KKOKT10_002          NA          NA          NA          NA          NA
#> KKOKT10_003          NA          NA          NA          NA          NA
#> KKOKT10_004 -0.03185612          NA          NA          NA          NA
#> KKOKT10_005 -0.02905074 -0.01185270          NA          NA          NA
#> KKOKT10_006 -0.04351625 -0.03944723 -0.02053090          NA          NA
#> KKOKT10_007 -0.07049867 -0.06711906 -0.02287331 -0.07056291          NA
#> 
#> , , 4
#> 
#>              KKOGR07_000  KKOGR07_001  KKOGR07_002  KKOGR07_003  KKOGR07_004
#> KKOGR07_000           NA           NA           NA           NA           NA
#> KKOGR07_001 -0.008896048           NA           NA           NA           NA
#> KKOGR07_002 -0.024812706  0.003427320           NA           NA           NA
#> KKOGR07_003 -0.010104170 -0.029167863 -0.004135822           NA           NA
#> KKOGR07_004 -0.024069305  0.003416512 -0.032904132 -0.011246212           NA
#> KKOGR07_005 -0.027426826 -0.026119549 -0.027501234 -0.031934541 -0.033623720
#> KKOGR07_006 -0.058927064 -0.073109570 -0.027737987 -0.048849145 -0.037797847
#> KKOKT10_000  0.012173300 -0.009966605  0.003012033 -0.026012717 -0.004517671
#> KKOKT10_001 -0.016321520 -0.038887597 -0.007537818 -0.037785695 -0.017098789
#> KKOKT10_002  0.045848801 -0.027878586  0.037182150 -0.030613184  0.033336257
#> KKOKT10_003 -0.046222880 -0.013197447 -0.045674316 -0.021742940 -0.045337114
#> KKOKT10_004 -0.007403911  0.067273333 -0.028723415  0.042903094 -0.008919861
#> KKOKT10_005  0.109231268 -0.007343741  0.048991521 -0.012955305  0.045221206
#> KKOKT10_006 -0.033897380  0.019434678 -0.044400045  0.000687371 -0.029268346
#> KKOKT10_007  0.381334117  0.169618679  0.221969590  0.087269494  0.211937581
#>              KKOGR07_005 KKOGR07_006  KKOKT10_000 KKOKT10_001  KKOKT10_002
#> KKOGR07_000           NA          NA           NA          NA           NA
#> KKOGR07_001           NA          NA           NA          NA           NA
#> KKOGR07_002           NA          NA           NA          NA           NA
#> KKOGR07_003           NA          NA           NA          NA           NA
#> KKOGR07_004           NA          NA           NA          NA           NA
#> KKOGR07_005           NA          NA           NA          NA           NA
#> KKOGR07_006 -0.047005171          NA           NA          NA           NA
#> KKOKT10_000 -0.019029754 -0.03950934           NA          NA           NA
#> KKOKT10_001 -0.036182255 -0.06901322 -0.023905517          NA           NA
#> KKOKT10_002 -0.011709593 -0.05122598 -0.010110577 -0.02251839           NA
#> KKOKT10_003 -0.041288591 -0.04941970 -0.023741421 -0.03563701  0.012762024
#> KKOKT10_004 -0.002240825  0.01477124  0.061284814  0.04301556  0.120855349
#> KKOKT10_005  0.001480810 -0.02596548  0.002966885 -0.00215586 -0.008741291
#> KKOKT10_006 -0.026993984 -0.02524031  0.014360521 -0.00308023  0.060180014
#> KKOKT10_007  0.104331971  0.13725110  0.157691647  0.18092852  0.147281016
#>             KKOKT10_003 KKOKT10_004 KKOKT10_005 KKOKT10_006 KKOKT10_007
#> KKOGR07_000          NA          NA          NA          NA          NA
#> KKOGR07_001          NA          NA          NA          NA          NA
#> KKOGR07_002          NA          NA          NA          NA          NA
#> KKOGR07_003          NA          NA          NA          NA          NA
#> KKOGR07_004          NA          NA          NA          NA          NA
#> KKOGR07_005          NA          NA          NA          NA          NA
#> KKOGR07_006          NA          NA          NA          NA          NA
#> KKOKT10_000          NA          NA          NA          NA          NA
#> KKOKT10_001          NA          NA          NA          NA          NA
#> KKOKT10_002          NA          NA          NA          NA          NA
#> KKOKT10_003          NA          NA          NA          NA          NA
#> KKOKT10_004 -0.02826234          NA          NA          NA          NA
#> KKOKT10_005  0.03202169  0.12305911          NA          NA          NA
#> KKOKT10_006 -0.04644397 -0.03699116  0.08632555          NA          NA
#> KKOKT10_007  0.20079113  0.32465171  0.16204766   0.3023007          NA
#> 
#> , , 5
#> 
#>              KKOGR07_000  KKOGR07_001   KKOGR07_002  KKOGR07_003 KKOGR07_004
#> KKOGR07_000           NA           NA            NA           NA          NA
#> KKOGR07_001  0.018540336           NA            NA           NA          NA
#> KKOGR07_002 -0.034989711 -0.009676438            NA           NA          NA
#> KKOGR07_003  0.045041138 -0.028611565  0.0195866892           NA          NA
#> KKOGR07_004  0.001000616 -0.030498860 -0.0100099041 -0.026852552          NA
#> KKOGR07_005  0.089449035 -0.013123420  0.0476314122 -0.024104014 -0.01364269
#>             KKOGR07_005  KKOGR07_006  KKOKT10_000 KKOKT10_001   KKOKT10_002
#> KKOGR07_000          NA           NA           NA          NA            NA
#> KKOGR07_001          NA           NA           NA          NA            NA
#> KKOGR07_002          NA           NA           NA          NA            NA
#> KKOGR07_003          NA           NA           NA          NA            NA
#> KKOGR07_004          NA           NA           NA          NA            NA
#> KKOGR07_005          NA           NA           NA          NA            NA
#>             KKOKT10_003 KKOKT10_004  KKOKT10_005 KKOKT10_006 KKOKT10_007
#> KKOGR07_000          NA          NA           NA          NA          NA
#> KKOGR07_001          NA          NA           NA          NA          NA
#> KKOGR07_002          NA          NA           NA          NA          NA
#> KKOGR07_003          NA          NA           NA          NA          NA
#> KKOGR07_004          NA          NA           NA          NA          NA
#> KKOGR07_005          NA          NA           NA          NA          NA
#> 
#>  [ reached getOption("max.print") -- omitted 9 row(s) and 95 matrix slice(s) ]
#> 
#> $pvalue
#>             KKOGR07_000 KKOGR07_001 KKOGR07_002 KKOGR07_003 KKOGR07_004
#> KKOGR07_001        0.90                                                
#> KKOGR07_002        0.81        0.87                                    
#> KKOGR07_003        0.62        0.68        0.55                        
#> KKOGR07_004        0.50        0.37        0.42        0.18            
#> KKOGR07_005        0.89        0.24        0.33        0.19        0.15
#> KKOGR07_006        0.78        0.44        0.43        0.31        0.34
#> KKOKT10_000        0.04        0.01        0.01        0.08        0.00
#> KKOKT10_001        0.94        0.76        0.74        0.77        0.41
#> KKOKT10_002        0.71        0.49        0.61        0.54        0.42
#> KKOKT10_003        0.55        0.41        0.47        0.43        0.25
#> KKOKT10_004        0.63        0.43        0.44        0.58        0.23
#> KKOKT10_005        0.56        0.30        0.38        0.40        0.25
#> KKOKT10_006        0.30        0.21        0.24        0.16        0.77
#> KKOKT10_007        0.67        0.38        0.52        0.36        0.45
#>             KKOGR07_005 KKOGR07_006 KKOKT10_000 KKOKT10_001 KKOKT10_002
#> KKOGR07_001                                                            
#> KKOGR07_002                                                            
#> KKOGR07_003                                                            
#> KKOGR07_004                                                            
#> KKOGR07_005                                                            
#> KKOGR07_006        0.74                                                
#> KKOKT10_000        0.00        0.00                                    
#> KKOKT10_001        0.80        0.64        0.12                        
#> KKOKT10_002        0.19        0.38        0.01        1.00            
#> KKOKT10_003        0.12        0.22        0.01        0.96        0.84
#> KKOKT10_004        0.17        0.23        0.03        0.92        0.70
#> KKOKT10_005        0.19        0.27        0.06        0.57        0.53
#> KKOKT10_006        0.06        0.17        0.00        0.40        0.23
#> KKOKT10_007        0.37        0.44        0.00        0.79        0.58
#>             KKOKT10_003 KKOKT10_004 KKOKT10_005 KKOKT10_006
#> KKOGR07_001                                                
#> KKOGR07_002                                                
#> KKOGR07_003                                                
#> KKOGR07_004                                                
#> KKOGR07_005                                                
#> KKOGR07_006                                                
#> KKOKT10_000                                                
#> KKOKT10_001                                                
#> KKOKT10_002                                                
#> KKOKT10_003                                                
#> KKOKT10_004        0.86                                    
#> KKOKT10_005        0.48        0.48                        
#> KKOKT10_006        0.23        0.17        0.20            
#> KKOKT10_007        0.31        0.31        0.39        0.31
#>