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Plot classified SNPs into deviants/CNVs and non-deviants/non-CNVs

Source: R/detect.R
dup.plot.Rd

The function plots detected deviants/CNVs from functions sig.snps, cnv and dupGet on a median ratio (MedRatio) Vs. proportion of heterozygote (PropHet) plot.

Usage

dup.plot(ds, ...)

Arguments

ds

a data frame of detected deviants/cnvs (outputs of functions above)

...

other graphical parameters to be passed to the function plot

Value

Returns no value, only plots proportion of heterozygotes vs allele median ratio separated by duplication status

Author

Piyal Karunarathne

Examples

if (FALSE) data(alleleINF)
DD<-dupGet(alleleINF,plot=FALSE)
#> categorizing deviant SNPs with 
#>  excess of heterozygotes z.all & chi.all
dup.plot(DD)