A function to remove the alleles with minimum allele frequency and keep only
a bi-allelic matrix when loci are multi-allelic
Usage
maf(h.table, AD = TRUE, verbose = TRUE, parallel = FALSE)
Arguments
- h.table
allele depth table generated from the function hetTgen
- AD
logical. If TRUE a allele depth table similar to hetTgen
output will be returns; If FALSE, individual AD values per SNP will be
returned in a list.
- verbose
logical. Show progress
- parallel
logical. whether to parallelize the process
Value
A data frame or a list of minimum allele frequency removed allele depth
Author
Piyal Karunarathne
Examples
if (FALSE) mf<-maf(ADtable) # \dontrun{}
