Export VCF files — exportVCF • rCNV

A function to export tables/matrices in VCF format to VCF files

Usage

exportVCF(out.vcf, out.path, compress = TRUE)

Arguments

out.vcf: a matrix or data frame in vcf file format to be exported
out.path: a character string of output path for the vcf file; should end in the name as the vcf file and .vcf. See examples
compress: logical. whether to compress the output file. If TRUE, the file will be .gz compressed

Value

Exports a vcf file to a given destination

Author

Piyal Karunarathne

Examples

if (FALSE) vcf.file.path <- paste0(path.package("rCNV"), "/example.raw.vcf.gz")
vcf <- readVCF(vcf.file.path)
#> Error in eval(expr, envir, enclos): object 'vcf.file.path' not found
exportVCF(vcf,"../exVcf.vcf")
#> Error in eval(expr, envir, enclos): object 'vcf' not found