A function to export tables/matrices in VCF format to VCF files
Usage
exportVCF(out.vcf, out.path, compress = TRUE)
Arguments
- out.vcf
a matrix or data frame in vcf file format to be exported
- out.path
a character string of output path for the vcf file;
should end in the name as the vcf file and .vcf. See examples
- compress
logical. whether to compress the output file. If TRUE,
the file will be .gz compressed
Value
Exports a vcf file to a given destination
Author
Piyal Karunarathne
Examples
if (FALSE) vcf.file.path <- paste0(path.package("rCNV"), "/example.raw.vcf.gz")
vcf <- readVCF(vcf.file.path)
#> Error in eval(expr, envir, enclos): object 'vcf.file.path' not found
exportVCF(vcf,"../exVcf.vcf") # \dontrun{}
#> Error in eval(expr, envir, enclos): object 'vcf' not found
