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Export VCF files

Source: R/exportVCF.R
exportVCF.Rd

A function to export tables/matrices in VCF format to VCF files

Usage

exportVCF(out.vcf, out.path, compress = TRUE)

Arguments

out.vcf

a matrix or data frame in vcf file format to be exported

out.path

a character string of output path for the vcf file; should end in the name as the vcf file and .vcf. See examples

compress

logical. whether to compress the output file. If TRUE, the file will be .gz compressed

Value

Exports a vcf file to a given destination

Author

Piyal Karunarathne

Examples

if (FALSE) vcf.file.path <- paste0(path.package("rCNV"), "/example.raw.vcf.gz")
vcf <- readVCF(vcf.file.path)
exportVCF(vcf,"../exVcf.vcf") # \dontrun{}
#> compressing file