Skip to contents

Allele Depth (AD) example data

Source: R/data.R
ADtable.Rd

Example SNPs data of Chinook Salmon from Larson et al. et al. 2014. The data contains only a partial snps data set of RadSeq data after filtering.

Usage

data(ADtable)

Format

An object of class data.frame with 3000 rows and 109 columns.

References

  • Larson, W. A., Seeb, L. W., Everett, M. V., Waples, R. K., Templin, W. D., & Seeb, J. E. (2014). Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha). Evolutionary Applications, 7(3), 355-369.

  • McKinney, G. J., Waples, R. K., Seeb, L. W., & Seeb, J. E. (2017). Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping by sequencing data from natural populations. Molecular Ecology Resources, 17(4)